bioinfo-chru-strasbourg / vcf2circos

python plotly Circos from VCF

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Getting No input file Error

apkbala107 opened this issue · comments

docker run -v ${PWD}:/data/ yussab/vcf2circos:1.0 vcf2circos --input ADCYAP1_modified.vcf --options Static/options.json --output ADCYAP1.html -a hg19

-._ .--'"'--._ _.--'"'--. .--'"'--._ _ '-:.'||"':-. '-:.'||"':-. '-:.'||"':-. '. : '.
'. '. | | | |'. '. | | | |'. '. | | | |'. '.: '. '.
: '. '.| | | | '. '.| | | | '. '.| | | | '. '. : '. . ' '. .:
| :.' '. .:_ | :_.' '. .: | :_.' '. .' .
-..,..-' -..,..-' -..,..-' `

                 __ ___      _
                / _|__ \    (_)
     __   _____| |_   ) |___ _ _ __ ___ ___  ___
     \ \ / / __|  _| / // __| | '__/ __/ _ \/ __|
      \ V / (__| |  / /| (__| | | | (_| (_) \__ \
       \_/ \___|_| |____\___|_|_|  \___\___/|___/

Author: Jean-Baptiste Lamouche, Antony Le Bechec, Jin Cui
Version: 1.1
Last update: Mars 26 2023

[ERROR] No input file 'ADCYAP1_modified.vcf

Hi,

Try with the absolute path of your input file in the command, it should work,

Best
JB