BioImage.IO

bioimage-io-resources

Model repository for bioimage.io

AdvanceImageAnalysisEMBO2023

workflows-bioimage-io-python

BioImage.IO Workflow definitions and implementations. This library extends the functionality of the BioImage.IO Core library.

bioimageio-monai

MONAI - BioImage Model Zoo specifications translation. The aim of this repo is to build a programmatic translation that takes MONAI models and converts them into a BioImage.IO compatible format.

core-bioimage-io-java

Java specific core utilities for interpretation of specification files of the bioimage model zoo

PredictorOp

use-cases

Drafting the use-cases for the publication

nbpreview

Render IPython/Jupyter notebooks without running a notebook server.

bioimageio.core-feedstock

A conda-smithy repository for bioimageio.core.

bioimageio.spec-feedstock

A conda-smithy repository for bioimageio.spec.

example-unet-configurations

icy-bioimage-io

ilastik-bioimage-io

Model repo for Ilastik

pytorch-bioimage-io

Pytorch specific core utilities for interpretation of specification files of the bioimage model zoo

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

tfjs-bioimage-io

Tensorflow.js specific core utilities for interpretation of specification files of the bioimage model zoo