Biodev - McWeeney Research Group 's repositories
beataml2_manuscript
Workflow to reproduce results and figures for the second BeatAML manuscript
beataml2.0_data
Data accompanying the BeatAML2.0 manuscript
ADHDVariantAnnotation
Workflows and Code for Annotating Genomic Variants
packageDir
pathway analysis package for HNSCC paper
batchtools
Tools for computation on batch systems
bias_fairness_in_ml
Applied Labs for 'Achieving Fairness in ML/AI'
HNSCC_Notebook
Workflow of light/dark pathways in HNSCC
pathLayerDistributionVersion2
Experimental version, ie: not guaranteed to function correctly!
beataml_genomics
Public version of BeatAML workflow
gatk-protected
GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
immpload
Immport upload preparation
openCyto
A package that provides data analysis pipeline for flow cytometry.
vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms