biocyberman

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Aalborg University

Aalborg, Denmark

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aalborguh

bioslaD

Vang Le's repositories

covid19

covid19

Language:PythonGPL-3.01 10

machine-learning-book

Code Repository for Machine Learning with PyTorch and Scikit-Learn

Language:Jupyter NotebookMIT100

2024_DataEng

Data Engineering class

Language:HTML000

augur

Pipeline components for real-time phylodynamic analysis

Language:PythonAGPL-3.0010

auspice

Web app for visualizing pathogen evolution

Language:JavaScriptAGPL-3.0010

beagle-lib

general purpose library for evaluating the likelihood of sequence evolution on trees

Language:C++LGPL-3.0010

bioconda-recipes

Conda recipes for the bioconda channel.

Language:Shell020

cheatsheets

My cheatsheets

Language:CSS010

covid

Temporal variation in transmission during the COVID-19 outbreak

Language:TeXMIT010

covid-rt-estimates

National and subnational estimates of the time-varying reproduction number for Covid-19

Language:RMIT010

covidregionaldata

An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wherever available we also provide data on deaths, hospitalisations, and tests. National level data is also supported using a range of data sources as well as linelist data and links to intervention data sets.

Language:RNOASSERTION010

deepops

Tools for building GPU clusters

Language:ShellBSD-3-Clause010

elbencho

A distributed storage benchmark for file systems, object stores & block devices with support for GPUs

Language:C++GPL-3.0010

fpart

Sort files and pack them into partitions

Language:CBSD-2-Clause010

gpu-monitoring-tools

Tools for monitoring NVIDIA GPUs on Linux

Language:CApache-2.0010

MetaboAnalystR

R package for MetaboAnalyst

Language:RGPL-3.0010

mish-cuda

Mish Activation Function for PyTorch

Language:Jupyter NotebookMIT010

ncov

Nextstrain build for novel coronavirus SARS-CoV-2

Language:PythonMIT010

nextclade

Assign SARS-CoV-2 clades in the browser

Language:TypeScriptMIT010

packer-maas

Packer templates to create MAAS deployable images

Language:PythonNOASSERTION000

pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

Language:PythonGPL-3.0010

prometheus-slurm-exporter

Prometheus exporter for performance metrics from Slurm.

Language:GoGPL-3.0010

pyinstaller

Freeze (package) Python programs into stand-alone executables

Language:PythonNOASSERTION010

raxml-ng

RAxML Next Generation: faster, easier-to-use and more flexible

Language:C++AGPL-3.0010

singularity-compose

orchestration for singularity containers (under development)

Language:PythonMPL-2.0010

singularity-mariadb

An real-world-like example of using singularity compose

Language:Shell020

singularity-r

R in a Singularity container

Language:RoffMIT010

treetime

Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

Language:PythonMIT010

valgrind

Experimental Version of Valgrind for macOS 10.14.6 Mojave and 10.15.1 Catalina

Language:CGPL-2.0010

vast-exporter

VAST Prometheus Exporter

Language:PythonApache-2.0010