biocore / qurro

Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples

https://biocore.github.io/qurro

biocore/qurro Issues

Update the README to specify which Qurro version should be installed based on your QIIME 2 version
Updated a month ago10
conda-forge recipe now requires Python >= 3.7, < 3.8.0a0 -- this prevents installation from conda into QIIME 2 environments
Updated 6 months ago2
Installation error "pip's dependency resolver does not currently take into account all the packages that are installed."
Updated 8 months ago3
Qurro crashes with ultra high dimensional readouts
Updated a year ago2
Split up taxonomy annotations into multiple columns, one for each level
Updated a year ago4
Qurro will break on newer (>= 2020.11) versions of QIIME 2
Closed 2 years ago5
Switch to GitHub actions for CI
Closed 2 years ago3
Support excluding metadata columns from the "sample plot data" output TSV
Closed 2 years ago
Save multiple log-ratio selections before exporting
Updated 3 years ago
Broken link in ALDEx2 tutorial
Closed 3 years ago
Discuss log-ratio generalizability / training and test splits in a tutorial?
Updated 3 years ago
TypeError: precision_score() got an unexpected keyword argument 'Y_pred'
Closed 4 years ago2
Checking for ratio values
Closed 4 years ago18
species level
Closed 4 years ago2
zsh: command not found: qurro
Closed 4 years ago2
TypeError: astype() got an unexpected keyword argument 'copy'
Closed 4 years ago3
Move "Apply" button for autoselection down a block and center it
Updated 4 years ago
Add inverse of "contains text separated by |" option
Updated 4 years ago
Adjust matching to be more consistent to Emperor/Empress
Updated 4 years ago
Add nicer API for using Qurro outside of QIIME 2 but from within Python
Updated 4 years ago
Clarify explanation of "differentials"
Updated 4 years ago1
Support configurable "rank types"
Updated 4 years ago
Support textual searching via regular expressions
Updated 4 years ago3
Update documentation to specify that min python version is 3.6
Closed 4 years ago
Add "Classic QIIME Colors" color scheme for categorical data
Closed 4 years ago2
Add more context to demo datasets
Updated 4 years ago
Put feature metadata columns before (to the left of) ranking columns in the DataTables
Updated 4 years ago
Add TCGA and color composition datasets to Qurro demos
Updated 4 years ago
Add "data sources" links / references to the bottom for the color composition data and TCGA data
Updated 4 years ago
Support configuring circle size in the sample plot
Updated 4 years ago
Better rank plot colorschemes for accommodating users with colorblindness
Updated 4 years ago
Add option to lock log-ratio axis
Updated 5 years ago2
Boxplots don't work in Safari
Updated 5 years ago
Document precision losses in metadata/etc. for standalone Qurro
Updated 5 years ago
Export all feature ranking/metadata column info for selected features
Updated 5 years ago
If you leave the boxplot checkbox checked, then navigate "back" from the page, then navigate "forwards" to return to the Qurro plot, then the sample plot doesn't show up as a boxplot
Updated 5 years ago
_metadata_utils.read_metadata_file() converts empty strings to NaNs and leaves the NaNs in the output
Closed 5 years ago2
Finish updating moving pictures tutorial
Closed 5 years ago
Adjust "make notebooks" command to fail when an external command fails
Updated 5 years ago2
Support showing two log-ratios at once
Updated 5 years ago1
Add filtering step to >= 11 week-old mice in DEICODE sleep apnea tutorials
Updated 5 years ago
Document workflow of tool with not-just-microbiome datasets
Closed 5 years ago1
Support saving/loading the "state" of the visualization (what fields are selected, etc.)
Updated 5 years ago
When you zoom in super far on the rank plot, the display breaks a bit
Updated 5 years ago
Update BIOM version required
Closed 5 years ago
More rank plot color schemes
Updated 5 years ago
support reversed color schemes
Updated 5 years ago3
Some Qarcoal tests failing on Travis
Closed 5 years ago4
Add "Current Ranking" to Feature DataTables
Updated 5 years ago
Add "Sample Presence Count" to Feature DataTables
Updated 5 years ago3