biochunan

LightGBM

A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks.

gated-graph-neural-network-samples

Sample Code for Gated Graph Neural Networks

LiteratureDL4Graph

A comprehensive collection of recent papers on graph deep learning

DL4MolecularGraph

Literature of deep learning for graphs in Chemistry and Biology

deepH3-distances-orientations

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

DIPS

Database of Interacting Protein Structures (DIPS)

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

PlmDCA.jl

Pseudo Likelihood Maximization for protein in Julia

dlaicourse

Notebooks for learning deep learning

UEP

en.javascript.info

Modern JavaScript Tutorial

dash-bio

Open-source bioinformatics components for Dash

nteract

📘 The interactive computing suite for you! ✨

masif

MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.

pose-animator

cnn-explainer

Learning Convolutional Neural Networks with Interactive Visualization.

PyRosetta.notebooks

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

pdbe-molstar

Molstar PDBe implementation

3Dmol.js

WebGL accelerated JavaScript molecular graphics library

startbootstrap-sb-admin-2

A free, open source, Bootstrap admin theme created by Start Bootstrap

LiteMol

A library/plugin for handling 3D structural molecular data (not only) in the browser.

molstar

A comprehensive macromolecular library

deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

doi2bib2

gganimate

A Grammar of Animated Graphics

oceanic-reef-terminal

Oceanic Reef theme for Terminal (Mac OS X)

manim

Animation engine for explanatory math videos