biochunan

awesome-point-cloud-analysis-2023

A list of papers and datasets about point cloud analysis (processing) since 2017. Update every day!

Graphormer

Graphormer is a general-purpose deep learning backbone for molecular modeling.

freesasa

C-library for calculating Solvent Accessible Surface Areas

graph-neural-networks-roadmap

ANARCI

Antibody Numbering and Antigen Receptor ClassIfication

ProteinMPNN

Code for the ProteinMPNN paper

3D-EMGP

[AAAI 2023] The implementation for the paper "Energy-Motivated Equivariant Pretraining for 3D Molecular Graphs"

learning-react

The code samples for Learning React by Alex Banks and Eve Porcello, published by O'Reilly Media

diffusers

🤗 Diffusers: State-of-the-art diffusion models for image and audio generation in PyTorch and FLAX.

ScanNet

Graph-Neural-Networks-in-Life-Sciences

node-express-course

acaca

Canonical assignment code from our 1996 paper [PMID: 8947577]

SAAP3

The SAAPdap/SAAPpred software and web interface

Algorithms

数据结构和算法专项训练营。✍️✍️✍️

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

IgLM

Generative Language Modeling for Antibody Design

coreui-free-bootstrap-admin-template

Free Bootstrap Admin & Dashboard Template

d2-admin

An elegant dashboard

ColabFold

Making Protein folding accessible to all!

GraphGym

Platform for designing and evaluating Graph Neural Networks (GNN)

antiberta

Public repository describing training and testing of AntiBERTa.

PytorchGeometricTutorial

Pytorch Geometric Tutorials

deeprank

This repository has been integrated in https://github.com/DeepRank/deeprank2

Deeprank-GNN

Graph Network for protein-protein interface

Pymol-script-repo

Collected scripts for Pymol

TRScore

se3-transformer-pytorch

Implementation of SE3-Transformers for Equivariant Self-Attention, in Pytorch. This specific repository is geared towards integration with eventual Alphafold2 replication.

equidock_public

EquiDock: geometric deep learning for fast rigid 3D protein-protein docking

invariant-point-attention

Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorch module