bioThai / Demultiplex

Script to demultiplex 52 FASTQ files that contain biological reads with incorrect indexes or unmatched/low-quality-score indexes. This algorithm figures out which reads have hopped indexes and which reads have unmatched/low quality indexes, and separates these reads from the correctly-indexed reads. Each correctly-indexed read is separated into different bins/files based on their indexes.

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Script to demultiplex 52 FASTQ files that contain biological reads with incorrect indexes or unmatched/low-quality-score indexes. This algorithm figures out which reads have hopped indexes and which reads have unmatched/low quality indexes, and separates these reads from the correctly-indexed reads. Each correctly-indexed read is separated into different bins/files based on their indexes.


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