bioCKO's repositories
adaptiPhy
This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulatory genome using an appropriate proxy neutral"
admixturePipeline
A pipeline that accepts a VCF file to run through Admixture
asynt
Genome alignment and synteny plots
Coimbra-et-al-2021_CurrBiol
Code used to analyse WGS data of giraffe in Coimbra et al. 2021 (https://doi.org/10.1016/j.cub.2021.04.033)
CS-Books
🔥🔥超过1000本的计算机经典书籍、个人笔记资料以及本人在各平台发表文章中所涉及的资源等。书籍资源包括C/C++、Java、Python、Go语言、数据结构与算法、操作系统、后端架构、计算机系统知识、数据库、计算机网络、设计模式、前端、汇编以及校招社招各种面经~
duck_comp_gen
Comparative genomics of obligate brood parasite and closely related species in Anatidae
evo
A loose set of tools for (mainly evolutionary) genomics
fusion_twas
methods for functional summary-based imputation
GALA
Long-reads Gap-free Chromosome-scale Assembler
Genomics--butterfly
Scripts behind published genomics analysis
genomics_general
General tools for genomic analyses.
GriffinDetector
To find fusion genes by protein sequences at genome level from several closely related species
hcontortus_genome
Project area for Haemonchus contortus work
PSASS
Pooled Sequencing Analysis for Sex Signal
RNA-combine
RNA-seq data comprehensive data analysis toolbox
SATC
Sex assignment through coverage
sexdelim
delimit sex-linked regions in chromosome-scale genome assemblies
SURVIVOR
Toolset for SV simulation, comparison and filtering
TOGA
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
tutorials-1
Tutorials on evolutionary genomics
VIRTUS2
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.