bigfacebig's repositories
Beautiful-Visualization-with-R
《R语言数据可视化之美》配套代码
Chloroplast-genome-assembly
A pipeline for assemble chroloplast genome using short/long reads
dorothea
R package to access DoRothEA's regulons
HumanPilot
Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
idep
Integrated Differential Expression and Pathway analysis
micgent
The main back-end component of NGS-MSTB: Next Generation Sequencing Microbial Surveillance Toolbox
NAM-genomes
Detailed bioinformatics scripts and methods used in the NAM genome paper.
reverse-proxy
Docker Image: Virtual Hosts Forward Proxy
Rplots-NGS
R scripts for NGS data visualization
Scar_manuscript_scripts
Scripts for analyses of scar data and data visualization, identifying evolutionarily independent isolates, and enumerating population level unique scar occurrences
ScarTrek
Python package for identifying genetic changes in whole-genome sequencing data
scDVA
An R shiny based tool used for single cell RNA-seq data visualization and analysis.
scell_lung_adenocarcinoma
This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset
SCope
Fast visualization tool for large-scale and high dimensional single-cell data
shiny-apps
A collection of web applications for exploring single cell RNA-seq data
SmallRNA-seq
SmallRNA sequencing
spatialLIBD
Code for the spatialLIBD R/Bioconductor package and shiny app
sports1.1
Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
st_pipeline
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
TAR-scRNA-seq
scRNA-seq analysis beyond gene annotations using transcriptionally active regions (TARs) generated from sequence alignment data
TidyTuesday
📊 My contributions to the #TidyTuesday challenge
visium_heart
Spatial transcriptomics of heart tissue
vulnerability_2021
Repository containing the code and methods for Bosch et al. 2021