bigdatagenomics / quinine

A refreshing treatment for all quality control ailments. Apache 2 licensed.

bigdatagenomics/quinine Issues

Scoverage plugin not used properly
Updated 8 years ago
Add Sequence Ontology identifiers as supported featureTypes
Closed 8 years ago
Check if mate is aligned before creating mate ReferenceRegion
Closed 8 years ago
String index out of range in ContaminationEstimator/VariantSite
Closed 8 years ago
Use flanking instead of startEnd
Updated 8 years ago
Compute insert size distribution
Updated 8 years ago1
Upgrade to ADAM 0.20.0
Updated 8 years ago
Register your spark package
Updated 8 years ago
Join on variant in contamination estimator is flaky
Closed 8 years ago
Load allele frequencies from annotated VCFs
Closed 8 years ago
Check collection size in contamination estimator before running
Closed 8 years ago
Filter out unmapped reads before running Region Joins
Closed 8 years ago
Contamination estimator can fail if 95% window is too small
Closed 8 years ago1
`CoverageStats` trips assert if distribution is empty
Closed 8 years ago
ReadStats NPE's on reads with null qualities
Closed 8 years ago
Add RNA-seq QC tool
Closed 8 years ago
Add MAF annotator
Closed 8 years ago
Add sample contamination estimator
Closed 8 years ago
Add in metrics for targeted sequencing panels
Closed 8 years ago
Compute coverage distribution
Closed 8 years ago
Vote of no confidence in new repository name
Closed 8 years ago
Update ADAM and plugin dependency versions
Closed 9 years ago
Provide separate artifacts for scala 2.10/2.11
Closed 9 years ago1
Release a v0.0.1
Closed 9 years ago3
Package names are wrong...
Closed 9 years ago4