/bin's repositories
spot
A set of tools to evaluate the reproducibility of computations
paper-stability-motion-estimation
A paper on the stability of motion estimation in fMRI (work in progress)
one-voxel-motion-correction
Scripts used in one-voxel experiments on fMRI motion correction
dask_io
A module optimizing the task graph in Dask's threaded scheduler in order to faster I/O operations.
fuzzy
A fuzzy ecosystem for evaluating the stability of your computational tools.
paper-generalizability-window-size
A paper reporting on experiments with the generalizability of window sizes for activity detection
paper-memory-storage
Paper on processing speeds of neuroimaging pipelines in different memory configurations
bigbrain-datalad
A DataLad dataset for BigBrain
docker-git-annex
A Docker container for git-annex
spa
Spark Pilot-job scheduler for HPC Applications
report-data-streams
A report on data stream algorithms for connected objects
stream-summarization
A library of stream summarization algorithms
paper-in-mem-locality
A paper studying the effect of in-memory computing and data locality on neuroimaging experiments
sam
A library to split and merge high-resolution 3D images
SparkDocker
A Docker image with Spark and other useful dependencies of our projects
lsh-images
Experiments with Locality-Sensitive Hashing in 3D/4D images
cbrain-plugins-hcp
CBRAIN plugins for pipelines of the Human Connectome Project
paper-multidimensional-ltc
A paper describing an extension of the LTC compression method to n dimensions and arbitrary distances
paper-reproducibility-collaborative-filtering
A paper presenting a method to predict pipeline reproducibility using collaborative filtering.
brainlearning
Machine-learning experiments with neuroimaging pipelines
data-marketplace
Services to implement a data marketplace
pipeline-tester
A web server to test Boutiques tools available in web platforms
reading-club
Notes on papers discussed in the lab's reading club
Dockerfiles-HCP-PreFreesurfer
A collection of Dockerfiles for HCP pipelines
SimBrain
A SimGrid-based simulator of protein spread in the brain
paper-sequential-split-merge
A paper that describes sequential split-and-merge algorithms for large 3D images
SimGridDocker
A Dockerfile to create a container image with SimGrid
concordia-master-thesis-template
A Latex template for a Concordia Master thesis
results-prediction-repro
A repository to store the results and reports related to the prediction of reproducibility differences.