bids-apps / dockerfile-templates

Dockerfile templates commonly used in BIDS Apps

Collection of Dockerfiles with popular neuroimaging software

The neuroimaging software currently supported are:

• AFNI: https://afni.nimh.nih.gov/afni/
• ANTs: http://stnava.github.io/ANTs/
• FreeSurfer: http://freesurfer.net/
• FSL: http://fsl.fmrib.ox.ac.uk/
• SPM with matlab compiler runtime: http://www.fil.ion.ucl.ac.uk/spm/
• SPM with octave: http://www.fil.ion.ucl.ac.uk/spm/

You can also use the Docker images directly by base your docker recipe on one of them. For example

FROM bids/base_fsl

These Dockerfiles are designed in a way that also makes them easy to combine. If you for example want to use both FSL and AFNI you can copy and paste content of one Dockerfile into another.