This repository contains code examples and data for the "On-the-fly image processing session with Python and napari" session by Robert Haase of the Smart Microscopy Workshop at the Center for Cellular imaging at the University of Gothenbourg in May 2021.
The slides are online available as well.
The code examples are provided under the unlicence which means you can freely reuse that code.
Big thanks goes to the napari commnunity for their excellent online tutorials and active support.
git clone https://github.com/BiAPoL/on_the_fly_image_processing_napari.git
cd on_the_fly_image_processing_napari
pip install -r requirements.txt
- Introduction to napari
- Interactive pixel classification using sckit-learn
- Key bindings
- Multi-threading
- On-the-fly processing
- Dock widgets
- Interactive measurements
- napari plugin example
- clEsperanto
