bhattlab / lathe

A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing

bhattlab/lathe Issues

Lathe Assembly Binning
Updated a year ago1
Can merge the subassemblies from canu and flye？
Closed 2 years ago
Error in rule basecall_final
Updated 2 years ago
circularization error
Updated 2 years ago2
Assembly summary for lathe
Updated 3 years ago
Snakemake fails at rule circularize_final
Updated 3 years ago5
Lathe manual
Updated 3 years ago
error in line 109 Grid_options
Updated 3 years ago9
wildcard error in line 242 SnakeMake File
Closed 3 years ago1
Error in rule extract_bigtigs
Updated 3 years ago
ERROR: No disjointigs were assembled - please check if the read type and genome size parameters are correct
Updated 3 years ago
Merge corrected contigs
Updated 3 years ago
Unable to run lathe due to error raised while building DAG of jobs
Updated 3 years ago6
Error: Failed to pull singularity image
Updated 3 years ago3
Snake file Issues: InvalidGitRepository
Updated 4 years ago
using fastq file as initial input file
Updated 4 years ago
How to use lathe in SGE cluster？
Updated 4 years ago
questions
Updated 4 years ago
Snakemake reports non-zero error code when checkpoints execute successfully
Updated 5 years ago
Rule `no_merge` failed because of symlink reference issue
Closed 5 years ago2
rule medaka_consensus failed to read bam file
Closed 5 years ago6
rule merge fails when genome_size config !=2
Closed 5 years ago1
rule misassemblies_correct has samtools but no singularity image
Closed 5 years ago
new output file format not supported
Closed 5 years ago