Dr. Bharanidharan devarajan's repositories
Microbiome_notes
A continually expanding collection of microbiome analysis tools
MetaShot
MetaShot (Metagenomics Shotgun) is a complete pipeline designed for the taxonomic classification of the human microbiota members. In MetaShot, third party tools and new developed Python and Bash scripts are integrated to analyze paired-end (PE) Illumina sequences, offering an automated procedure covering all the analysis steps from raw data management to taxonomic profiling. It is designed to analyze both DNA-Seq and RNA-Seq data.
nf-rnaSeqMetagen
Metagenomics pipeline
RNA-seq
rnaSeqFPro (beta) is a script for full processing of RNASeq data starting from fastq files. It performs fastqc quality control, mapping to the human genome hg19 using STAR second pass, counting with featurecounts using GENCODE gtf annotation, creates master table, performs differential analysis using DESeq2, generates graphs in gglot2.
pipe-t
A Galaxy Workflow for processing and analyzing miR expression profiles by RTqPCR
WES-Benchmarking-Pipeline_Manoj
Benchmarking of aligners and variant callers for Whole Exome Sequencing data
OCToPUS
Amplicon sequencing processing pipeline