bfortuner / contours

Setup

Requirements

• Python 3.4+
• Tested on Ubuntu 16.04

Install dependencies

conda env create -f environment.yml
source activate contours

Unit tests

python -m pytest tests.py (all tests)
python -m pytest tests.py::mytestfunc (single test)

Writeups

• PHASE1.md
• PHASE2.ipynb

Resources

• http://dicomlookup.com/lookup.asp
• https://github.com/pydicom/pydicom
• https://en.wikipedia.org/wiki/DICOM
• https://github.com/KeremTurgutlu/dicom-contour
• https://www.raddq.com/dicom-processing-segmentation-visualization-in-python/