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beroukhim-lab

beroukhim-lab

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ascets

This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm-level copy-number variant calls and arm-level weighted average log2 segment means from segmented copy number data.

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BISCUT-py3

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BISCUT

Breakpoint Identification of Significant Cancer Undiscovered Targets; detects genomic loci under selective pressures by analyzing partial-SCNAs

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AlkylatingAgentResistanceAnalysis

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ccnu_prism

Repository for all of the analysis for the CCNU project

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GATK_CN_CWL

Implementation of the GATK copy number pipeline in CWL (ported from WDL)

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oncoprint-template

Template Code for OncoPrint

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SVsig

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