Benedetto Polimeni's repositories
bioconda-recipes
Conda recipes for the bioconda channel.
cellranger
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly
CHM13
The complete sequence of a human genome
irkernel-hpc
Jupyter R kernel from a container, designed for working on a jupyterhub server/HPC
misc
Miscellaneous bioinformatics utilities
containerize-conda
Turn an existing conda environment into a Docker or Singularity container
CRSSANT
Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)
gget
🧬 gget enables efficient querying of genomic databases and software, such as Ensembl and AlphaFold, directly into a Python or terminal programming environment.
irescue
A tool to quantify transposable elements expression in scRNA-seq
jupyterext-text-shortcuts
A Jupyter Lab extension for keyboard text shortcuts
micromamba-docker
Rapid builds of small Conda-based containers using micromamba.
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
mppysam
Multiprocessing functionality with pysam
nanoseq
Nanopore demultiplexing, QC and alignment pipeline
nf-core-rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
podman-feedstock
A conda-smithy repository for podman.
pshazz
Give your powershell some pizazz.
scoop-extras
"Extras" bucket for Scoop
singularity-r
R in a Singularity container
SQuIRE
Software for Quantifying Interspersed Repeat Expression
st
simple statistics from the command line
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
test-datasets
Test data to be used for automated testing with the nf-core pipelines
TMManias-DIM-Filter-Gallery
Pre-made search commands for Destiny Item Manager for maintaining clean vault space and identifying armor stats.
tmux-sensible
basic tmux settings everyone can agree on