Bento Platform

bento

The official Bento distribution - orchestration and deployment infrastructure for the Bento platform.

katsu

Phenopackets-based metadata service for the Bento platform. Docs: https://metadata-service.readthedocs.io

bento_aggregation_service

Asynchronous search result aggregation service for the Bento platform.

bento_lib

Shared Python resources for Bento platform microservices.

bento_service_registry

Microservice implementing the GA4GH Service Registry API for the Bento platform.

bento-platform.github.io

bento_drs

Data repository service for the Bento platform, based on GA4GH's DRS specification.

bento_public

A publicly accessible portal for clinical datasets, where users are able to see high-level statistics of the data available through predefined variables of interest and search the data using limited variables at a time.

bento_authorization_service

Permissions and authorization service for the Bento platform.

bento_beacon

GA4GH Beacon v2 microservice for the Bento platform

bento_gateway

OpenResty-based gateway, configuration, & continuous building for inclusion in Bento deployments.

bento_notification_service

Notification service for the Bento platform.

bento_reference_service

Reference data (genomes & annotations) service for the Bento platform.

fasta-checksum-utils

Command-line utility and async Python library for checksumming FASTA files and individual contigs.

gohan

Genomic Variants search API, working from the VCF format.

bento_auth_js

Helper library for Bento frontends to authenticate with an OIDC IdP and authorize requests.

bento_base_images

Automated Bento platform base image building.

bento_build_action

GitHub CI composite action to build development and production containers for Bento components.

bento_charts

Recharts wrapper for use in Bento platform front-ends

bento_demo_dataset

Partially synthetic demo dataset for Bento.

bento_drop_box_service

Drop box and basic file management service for the Bento platform.

bento_event_relay

Socket.IO event relay for the Bento platform.

bento_images

bento_keycloak_dist

Keycloak Docker image distribution for the Bento platform. This is only relevant if a Bento instance is responsible for running its own IdP.

bento_log_service

Log-fetching microservice for the Bento platform

bento_postgis_dist

Cross-platform build of Postgres + PostGIS for use with the Bento Katsu service.

bento_variant_service

Variant search and GA4GH Beacon microservice for the Bento platform.

bento_web

React-based data discovery and management portal for the Bento platform.

bento_wes

Workflow execution service (based on GA4GH WES schemas) for the Bento platform.

takuan

An API for ingesting, organizing and querying data from transcriptomics experiments.