This repository contains the code to reproduce figures from the manuscript
XXX †Correspondence: benjamin.ostendorf@charite.de, sohail.tavazoie@rockefeller.edu
doi: XXX
| Experiment | Figure | Code file | R markdown output | Link to GEO dataset |
|---|---|---|---|---|
| RNA-seq of CD11c+ DLN cells from wildtype mice | Fig 3f | Fig3/R/Fig3.Rmd | Fig3/R/Fig3.md | XXX |
| RNA-seq of CD11c+ DLN cells from APOE-/- mice | ED Fig 6b | ED_Fig6b/R/ED_Fig6b.Rmd | ED_Fig6b/R/ED_Fig6b.md | XXX |
| RNA-seq of CD8+ OT-I T cells co-cultured with LXR+/+ BMDCs | Fig 5b-c | Fig5/R/Fig5.Rmd | Fig5/R/Fig5.md | XXX |
| RNA-seq of CD8+ OT-I T cells co-cultured with LXR-/- BMDCs | Fig 6d | Fig6_RNAseq/R/Fig6_RNAseq.Rmd | Fig6_RNAseq/R/Fig6_RNAseq.md | XXX |
| ATAC-seq of CD8+ OT-I T cells co-cultured with LXR-/- BMDCs | Fig 6e-f | Fig6_ATACseq/R/Fig6_ATACseq.Rmd | Fig6_ATACseq/R/Fig6_ATACseq.md | XXX |