benjschiller

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San Francisco, CA

Benjamin Schiller's repositories

twobitreader

A fast python class for reading 2-bit files (used by UCSC genome browser)

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seriesoftubes

An extended pipeline for Solexa ChIP-seq data

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checkmyclones

python library for verification of molecular clones by Sanger sequencing

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tabix

This is *not* the official repository ; this fork is intended to maintain Windows support for tabix (currently via mingw or psyam)

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facebookdata

Python module for parsing exported facebook data

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MACS

MACS -- Model-based Analysis of ChIP-Seq

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samtools

This is *NOT* the official repository of samtools. This repository is intended to maintain Windows / MSVC support in samtools for pysam

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scripter

Intended for automation of tasks on multicore computers

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COSMOS2

Python Scientific Pipeline Management System

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dotfiles

Terminal Settings (for OSX)

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dotvim

All my vim configuration files.

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intervaltree

A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.

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pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

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sphinx-minimal

Modified LaTeX style for Sphinx documentation, compatible with report / UC Thesis

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