benjjneb

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

decontam

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

LRASManuscript

Reproducible Analyses accompanying DADA2 + PacBio Manuscript

LoopManuscript

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

DecontamManuscript

Reprocible analyses accompanying the paper introducing the decontam method

ITS-Workflow

A descriptory pipeline for processing ITS Samples using DADA2

NCSUWorkshop

Workshop materials for NCSU workshop on DADA2 and Phyloseq

2018_ASM_Workshop

Microbiome Analysis Using R Workshop hosted at the 2018 ASM General Meeting in Atlanta, GA.

CanineEpilepsyManuscript

bioconda-recipes

Conda recipes for the bioconda channel.

FelineBileManuscript

GookinGroup

Updating Rmarkdown for the exploration of T.foetus data for the GookinGroup

q2-dada2

QIIME 2 plugin wrapping DADA2