bendmorris

pyj2d

Pygame for Jython. Originally forked from James Garnon: http://gatc.ca/projects/pyj2d/

python-phylopic

Simple Python phylopic.org wrapper

treelib-js

Javascript phylogenetic tree library

gun-violence

Do higher rates of gun ownership predict higher rates of gun violence?

rdf-treestore

A phylogenetic tree store with an RDF backend

swc_databases

Material from Software Carpentry SQL databases session. Originally developed for U. Virginia workshop Mar 7-8 2013.

jython-pgu

A fork of the Python Game Utilities refactored to run on Jython using pyj2d

lscolumns

pretty-print columns of data

biophylo

Phylogenetic computing library for Haskell

ncbi_taxonomy

Build a Newick tree from the NCBI taxonomy

phylolabel

Automatic labeling of higher-order taxa in a phylogeny using a reference taxonomy

adelaide_swc

aur

Download, build, and install packages from the Arch User Repository (AUR)

bbs_cooccurrence

cql

Parser for the Contextual Query Language (CQL)

fia_spatial_diversity

Quantifying the contributions of selection, dispersal, and drift to spatial diversity of tree communities.

Gitview

js widget to list github repositories

itis_taxonomy

Build a Newick tree from the ITIS taxonomy

mgrast

Simple tool for downloading lots of metagenomes from MG-RAST for microbial macroecology

nanote

Terminal note-taking application

picoides-phylogeography

Files from a project that I started and set aside - might be useful in the future

pomodzen

tiny-ass pomodoro timer using python and dzen2 for graphics

pyscotch

Implementation of Scotch programming language in Python

richness_scale

rosalind

rosalind.info solutions

rubenwriter

A fullscreen app for Ruben to type letters and numbers on my laptop without being able to minimize, quit, or do anything else.

swc-materials

SWC teaching materials

swc-shell

waxwing-phylogeography

Phylogeography of cedar and bohemian waxwings, and comparison to silky flycatchers. From a class project.

kong.hx

Strongly-typed access to the Kongregate API from Haxe.