bendichter

brokenaxes

Create matplotlib plots with broken axes

tenseflow

Change the tense of any text

bendichter.github.io

probeinterface

Python package to handle probe layout, geometry and wiring to device.

aind-data-schema

A library that defines AIND data schema and validates JSON.

bendichter

bids-specification

Brain Imaging Data Structure (BIDS) Specification

CaImAn

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

code-crafter

docs

Brainlife.io Documentation

filesystem_spec

A specification that python filesystems should adhere to.

hdfpath

XPath for HDF5

kerchunk

Cloud-friendly access to archival data

linkml

Linked Open Data Modeling Language

minian

miniscope analysis pipeline with interactive visualizations

ndx-aind-metadata

ndx-anatonical-localization

neurosift

Visualizations for Neuroscience

nwbio

odin-mit.github.io

openMINDS_documentation

Read-The-Docs documentation for the openMINDS metadata framework.

openscope_databook

OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈

parse

Parse strings using a specification based on the Python format() syntax.

probeinterface_library

Collection of probe description for probeinterface

py-pkgs

Open source book about making Python packages.

py_isx

Experimentlal pure-python API to read Inscopix data

python-neo

Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

sweep

Sweep: AI-powered Junior Developer for small features and bug fixes.

VAME

Variational Animal Motion Embedding - A tool for time series embedding and clustering