beardymcjohnface

Snaketool

Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff

Nektool

Cookiecutter profile for making a NextFlow-based bioinformatics tool

Koverage

Quickly get coverage statistics given reads and an assembly

Trimnami

Trim lots of metagenomics samples all at once

metasnek

Misc functions for metagenomic pipelines

Snaketool-utils

Utils for Snaketool CLI

workshop2022

FAME Metagenomics workshop 2022

alphaPhage

alphaFold applications for phage PPIs

beardymcjohnface.github.io

blog website

bioconda-recipes

Conda recipes for the bioconda channel.

clonePopSim

simulate a clonal population with snps/indels/inversions/translocations/deletions

DBSCAN-SWA-1

dinky

Dinky is a Jekyll theme for GitHub Pages

ficture

hecatomb-documentation

Documentation for Hecatomb (https://github.com/shandley/hecatomb)

pacer-hackathon-2023

PaCER Hackathon 2023 documentation and attendee guide

phables

Phables: from fragmented assemblies to high-quality bacteriophage genomes

PharokkaGoBRRRT

Run Megapharokka on lots of contigs

Phicore

work in progress. but got to do with phage genomes because they are awesome!

ProphagePredictionComparisons

Comparisons of multiple different prophage predictions

reneo

🦠🧬 Unraveling Viral Genomes from Metagenomes

SAW

snakemake-intro-pt2

files to start part 2 of my intro to snakemake

Snaketool-argparse

Cookiecutter profile for making a Snakemake-based bioinformatics tool

spae

NEW!!! Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!