This repository contains dated records of curated Monkeypox cases from the 2022 outbreak (April - ), a data dictionary, and a script used to pull contents from a spreadsheet into JSON and CSV files.
The script is intended for use by the curation team and supporting engineers. It requires access to the relevant Google Sheet, and a Google Cloud service account.
The data dictionary is located in the root directory of this project. It contains information about columns/fields in the data sets.
The archives folder contains dated JSON and CSV files. They are currently uploaded manually; regularly and automatically updated data sets live in an (currently private) S3 bucket.
Direct download (CSV): https://raw.githubusercontent.com/globaldothealth/monkeypox/main/latest.csv
Direct download (JSON): https://raw.githubusercontent.com/globaldothealth/monkeypox/main/latest.json
Python (requires pandas):
import pandas as pd
df = pd.read_csv("https://raw.githubusercontent.com/globaldothealth/monkeypox/main/latest.csv")R :
df <- read.csv("https://raw.githubusercontent.com/globaldothealth/monkeypox/main/latest.csv")If you would like to request changes, open an issue on this repository and we will happily consider your request. If requesting a fix please include steps to reproduce undesirable behaviors.
If you would like to contribute, assign an issue to yourself and/or reach out to a contributor and we will happily help you help us.
If you want to send data to us, you can use our template at monkeypox-template.csv which makes it easier for us to add to our list. Alternatively, you can open an issue with an attached CSV / XLSX file in this repository, or email info@global.health
- Global.health: Map visualization of cases by country
- Our World in Data: cumulative and daily confirmed and suspected case counts and map
- Healthmap: Map visualization of cases by country
This repository and data exports are published under the CC BY 4.0 license.
Please cite as: "Global.health Monkeypox (accessed on YYYY-MM-DD)"
&
Kraemer, Tegally, Pigott, Dasgupta, Sheldon, Wilkinson, Schultheiss, et al. Tracking the 2022 Monkeypox Outbreak with Epidemiological Data in Real-Time. The Lancet Infectious Diseases. https://doi.org/10.1016/S1473-3099(22)00359-0.