pad's repositories
bam-filter
A simple tool to calculate metrics from a BAM file and filter references with uneven coverages
clusterProfiler
:bar_chart: statistical analysis and visualization of functional profiles for genes and gene clusters
ARMOR
Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
EdwardsLab
Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edwards' bioinformatics lab at SDSU.
woltka
Web of Life Toolkit App
donor-selection
Exploring donor selection approaches for FMT trials
diablo
DIABLO - an integrative multi-group, multi-dataset classification method
CoordinatedMicrobiome
Analysis for "Neonatal gut and respiratory microbiota: coordinated development through time and space"
R_workshop
R Software Carpentry workshop