bcpd

bam-filter

A simple tool to calculate metrics from a BAM file and filter references with uneven coverages

clusterProfiler

:bar_chart: statistical analysis and visualization of functional profiles for genes and gene clusters

ARMOR

Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data

EdwardsLab

Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edwards' bioinformatics lab at SDSU.

woltka

Web of Life Toolkit App

donor-selection

Exploring donor selection approaches for FMT trials

diablo

DIABLO - an integrative multi-group, multi-dataset classification method

CoordinatedMicrobiome

Analysis for "Neonatal gut and respiratory microbiota: coordinated development through time and space"

test

firstrepo

R_workshop

R Software Carpentry workshop