bcdarwin

ANTs

Advanced Normalization Tools (ANTs)

bionix

Functional highly reproducible bioinformatics pipelines

bistro

A library to build and execute typed scientific workflows

dhall-docker-compose

:dash: A library for writing Docker Compose files in Dhall.

dmca

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EBTKS

MINC EBTKS library

eigen

Owl's OCaml Interface to Eigen3 C++ Library

fastai_scans

Fastai extension to work with 3d medical images

generate_deformation_fields

Given an input Jacobian determinant, this code will generate a deformation field that produces that Jacobian field. (Made for MINC format files)

interface_meta

A convenient way to expose an extensible API with enforced method signatures and consistent documentation.

lenses

R lenses

libminc

libminc is the core library and API of the MINC toolkit

minc-toolkit-containers

Making containers with minc-toolkit

minc-toolkit-extras

Extra miscellaneous scripts for minc-toolkit

minc-widgets

Collection of MINC widgets, perl and shell scripts

mne-python

MNE : Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

mni_autoreg

MINC mni_autoreg

mrtrix3

MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

nibabel

Python package to access a cacophony of neuro-imaging file formats

nix.dev

An opinionated guide for developers wanting to get things done with the Nix ecosystem.

nixpkgs

Nix Packages collection

NNlib.jl

Neural Network primitives with multiple backends

owl

Owl is an OCaml numerical library: dense and sparse matrix, linear algebra, regressions, maths and stats functions.

pydpiper

Python code for flexible pipeline control

pyminc

A python interface to the MINC 2 library, allowing use of numpy arrays to access MINC data, and other such similar goodies, developed by Jason Lerch

qbatch

simple-twitter

A bare-bones Twitter clone implemented in a single file

spinalcordtoolbox

Comprehensive and open-source library of analysis tools for MRI of the spinal cord.

StructuralCovariance

R and Python code for working with structural covariance networks

torchio

Tools for loading, augmenting and writing 3D medical images with PyTorch.