bbyun28's repositories
FASMIFRA
Molecular Generation by Fast Assembly of SMILES Fragments
Vina-GPU
A heterogeneous OpenCL implementation of AutoDock Vina
Modof-1
The implementation of Modof for Molecule Optimization
Auto-qPCR
A program to automatically process qPCR data from csv files in any PCR machine. To create a normalized table of RNA/DNA quantities, statistics and bar charts.
PROTAC-Model
Integrative modeling of PROTAC-mediated ternary complex
ML-ensemble-docking
Improving Structure-Based Virtual Screening with Ensemble Docking and Machine Learning
Protocol-Chemogenomics-Enrichment
Compounds selection and enrichment protocol
rnabio.org
website for the rnaseq course
iodata
Python library for reading, writing, and converting computational chemistry file formats and generating input files.
rstudio-server-conda
Run Rstudio Server in a conda environment
jupyterlab-prodigy
🧬 A JupyterLab extension for annotating data with Prodigy
TTClust
clusterize molecular dynamic trajectories (amber, gromacs, charmm, namd, pdb...)
InterMol
Conversion tool for molecular simulations
molfunc
fast functionalisation of molecules
2022-February-Introduction-to-R-for-Bioinformatics
An introduction to R for biologists
bioinformatics-workflows
minimal example implementations for bioinformatics workflow managers
paccmann_kinase_binding_residues
Comparison of active site and full kinase sequences for drug-target affinity prediction and molecular generation
DrugAI_Drug-Likeness
Drug-Likeness
Modof
Molecule Optimization via Fragment-based Generative Models
seq2science
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
awesome-streamlit
The purpose of this project is to share knowledge on how awesome Streamlit is and can be
RNAdetector
RNAdetector: a free user-friendly and stand-alone software for RNA-Seq data analysis
Training-modules
Materials for short, half-day workshops
Streamlit_DataScience_Apps
Streamlit Data Science and ML Apps in Python
kinoml
Structure-informed machine learning for kinase modeling
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
gcp-for-bioinformatics
GCP Essentials for Bioinformatics Researchers
making-it-rain
Cloud-based molecular simulations for everyone