bbolker / egfR0

egfR0

to get up and running...

re: make

To run code in this repo using the Makefile, use shellpipes remotes::install_github("dushoff/shellpipes") https://dushoff.github.io/shellpipes/

To pull and push (on git) idiomatically, simply run in terminal make sync.

other R packages

I think I installed epiGrowthFit manually/outside the make file, but don't recall -MER 20240130

Documents and documentation

• TODO.md contains some long-term desiderata from JD
• notes.md contains meeting notes from meetings primarily between JD, KH, and ML
• README.md (this document) is where MR is writing user notes as he gets to know the project...
• Makefile describes workflows.
• Not in this repo, but to understand the make workflows, it may help to see the shellpipes package documentation: https://dushoff.github.io/shellpipes/. for more, https://github.com/mac-theobio/useMakestuff
• makestuff/README.md has lots of make documentation