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Blaise deB Frederick (bbfrederick)

bbfrederick

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Home Page:www.nirs-fmri.net

Twitter:@blaisefrederick

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Blaise deB Frederick's repositories

rapidtide

rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data

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picachooser

A fast lightweight gui tool for sorting components from a MELODIC probabilistic ICA analysis

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capcalc

Various programs for processing and displaying coactivation patterns in fMRI data

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stabilitycalc

Automatic QC processing for fMRI data

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pysnirf

A python library to read and write SNIRF (standard near infrared files)

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basecontainer

Unix base container with mamba installed

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basecontainer_plus

basecontainer with FSL tools tacked on

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cvrprocessing

Code for processing data for grant NS097512

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docker-opengl

Docker - Mesa 3D OpenGL Software Rendering (Gallium) - LLVMpipe, and OpenSWR Drivers

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dotfiles

My dotfiles

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fix-container

Containerized version of FSL FIX

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fmriprep

fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

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gen_mid_regressors

Generate FSL regressors from the output of an EPrime MID run file

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gradunwarp-container

Containerized version of the HCP gradunwarp script

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medwatch

Python code for talking to medwatch

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micscriptlib

Routines to simplify the creation of neuroimaging proc scripts

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nipype

Workflows and interfaces for neuroimaging packages

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niworkflows

Common workflows for MRI (anatomical, functional, diffusion, etc)

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phys2denoise

A collection of scripts to prepare physiology data for fMRI denoise

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physiopy.github.io

Main website for Physiopy documentation.

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physioqc

Toolbox for physiological data (Automagic) Quality Control

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pynirs

Routines for processing NIRS data

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qtpy

Provides an uniform layer to support PyQt5, PyQt4 and PySide with a single codebase

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spikefix

Simple scripts for finding and removing spikes from fMRI datasets

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stable-diffusion-webui-mps

Stable Diffusion web UI

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ukbb_processing

Scripts to redo various parts of the UKBB preprocessing chain

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