Bioinformatics and Biostatistics Core Facility

Bioinformatics and Biostatistics Core Facility's repositories

bbcflib

Internal utility modules for the BBCF

Language:PythonGPL-3.0700

bbcfutils

Collection of stand-alone tools

Language:Python300

bedtools

A powerful toolset for genome arithmetic.

Language:C++GPL-2.0200

jbrowsor

Ruby on rails application for jbrowse

Language:Ruby200

pygdv

A user friendly genome browser

Language:JavaScript200

swisspalm

S-palmitoylation database

Language:HTML200

bein

Miniature LIMS and workflow manager for bioinformatics

Language:PythonGPL-3.0100

biorepo

BioRepo is a LIMS for HTS data @ EPFL - Vital-IT

Language:JavaScript100

bs

BioScript is a web application which have the purpose to build a common interface for job processing.

Language:Python100

bsPlugins

Plugin scripts for genomic data, used by bioscript or directly in python

Language:PythonGPL-3.0100

gdv

Genome Data Viewer

Language:Java100

turbotequila

TurboTequila is a starter for a Turbogears application with Tequila already enabled

Language:Python100

biorepo_ror4

A new version of biorepo on Ruby on Rails $

Language:Ruby000

bioscript_ruby

Language:RubyNOASSERTION000

gless

graphical "less" for track files

Language:PythonGPL-3.0000

jbrowse

Modern JavaScript-based Genome Browser

Language:JavaScriptNOASSERTION000

pyDNase

Python module for the easy handling and analysis of DNase-seq data

Language:CGPL-3.0000

pyrotrfid

This project is a pipeline to perform digital TRFLP.

Language:PythonGPL-3.0000

rnacounter

Counter of HTS reads

Language:PythonGPL-2.0000

tw2.bs

Toscawidget widgets for Bioscript

Language:Python000