Benjamin Barad's repositories
matplotlibrc
Settings file for matplotlib to maximize figure niceness.
bbarad.github.io
Personal Webpage
warp_watcher
Watch Warp Work
ETSegTools
Operations on Quantized or Binary CryoET Segmentations
cistem_dev_env
A Docker container for cisTEM development
defects_DLMBL
Team Defects project for DL@MBL project
DenoiSeg
Joint training of denoising and segmentation.
diffusion-net
Pytorch implementation of DiffusionNet for fast and robust learning on 3D surfaces like meshes or point clouds.
have_your_cake
Using neural networks to reduce the tradeoffs in tomographic data collections
HDN
This repository hosts the code for HDN (associated with the paper https://arxiv.org/pdf/2104.01374.pdf) for pixel and structured noise removal for microscopy and natural image datasets
lamella_mapper
Map tomograms back to their lamella position
membrain-seg
membrane segmentation in 3D for cryo-ET
mthompson-lab.github.io
Thompson Lab Website
nyt_science_speller
Spelling Bee twitter bot for words used often by scientists.
photos-of-me
Download your tagged photos from Facebook
pymol_syntax
Syntax rules for .pml files in sublime text.
teamtomo.github.io
A collaborative knowledge sharing platform for the cryo-ET community
TFS_Autoscript_Tools
Scripts written to interface with TFS dual beam instruments via the autoscript interface
wisemanlab.github.io
Fraser Lab website