bbalog87

catfish-genome

Pipelines, code and ressources for creating a fully haplotype-resolved T2T assembly of the African catfish (Clarias gariepinus) combining PacBio HiFi, ONT long reads and Hi-C data.

build_nextstrain

Nextstrain Analysis Automation Script. This wrapper Python script is developed to automate the analysis steps of RNA virus sequences as much as possible using Nextstrain.

30DaysGenerativeAI

Ce repo est créé pour partager toutes les ressouces des vidéos du challenge 30DaysGenerativeAI sur la chaîne Youtube LeCoinStat

amr-ngs-pipeline

A Nextflow pipeline for NGS antimicrobial resistance profiling. From raw NGS FASTQ to rendered AMR profiles

amromics

Antimicrobial Resistance Analysis

AMRplusplus_bioinformatic_workshop

bactopia

A flexible pipeline for complete analysis of bacterial genomes

bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

bbalog87

Config files for my GitHub profile.

Cenote-Taker2

Cenote-Taker2: Discover and Annotate Divergent Viral Contigs

bbalog87.github.io

Bioinformatics_resources

cheatsheets

Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.

EAC_pathogen_genomics

Data and resources accompanying the manuscript on Pathogen Next-Generation Sequencing in the East African Community. Includes NPHL survey responses and metadata on bacterial pathogens

EAC_project_Bioinformatics

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

github-readme-stats

:zap: Dynamically generated stats for your github readmes

grenepipe

A flexible, scalable, and reproducible pipeline to automate variant calling from sequence reads.

metagenomics

A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies

MicrobeTrace

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

myhugo-academic

nf-core-viralrecon

See the main fork of this repository here >>>

nguinkal_home2

pipeline-resources

Bioinformatics Pipeline and Visualization resources

public_health_bacterial_genomics

rapt

Read Assembly and Annotation Pipeline Tool

SuperPang

Non-redundant pangenome assemblies from multiple genomes or bins

TOGA

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

tree_work

viroprofiler

A containerized bioinformatics pipeline for viral metagenomic data analysis