Baum Lab's repositories
Gitting-started
Readme for Baum lab: how to set up repos, write R-markdown docs, and collaborate with Git
McPherson_etal_2018_MEE_sim-ecol-communities
Code for McPherson et al. 'A simulation tool to scrutinise the behaviour of functional diversity metrics' (in review)
Claar_etal_2020_SciRep
Data and R code accompanying: Chronic disturbance modulates symbiont (Symbiodiniaceae) beta diversity on a coral reef
Chalifour_etal_2019_MEPS
R code accompanying Chalifour et al. Habitat use by juvenile salmon, other migratory fish, and resident fish species underscores the importance of estuarine habitat mosaics
Chalifour_etal_2021_CJFAS
Code accompanying Chalifour et al. 2021. Chinook salmon exhibit long-term rearing and early marine growth in the Fraser River, B.C., a large urban estuary. CJFAS
Hertz_etal_2014_MEPS
Code accompanying Hertz, Robinson et al. Estimation of predator-prey mass ratios (2014, Marine Ecology Progress Series)
Magel_etal_2020_EcolApp
Data and R code for: Direct and indirect effects of climate change-amplified pulse heat stress events on coral reef fish communities
Robinson_etal_2017_GlobalChangeBiology
Code accompanying Robinson et al. Fishing degrades size structure of coral reef fish communities (2016, Global Change Biology).
Robinson_etal_2018_CoralReefs
R code accompanying Robinson et al. Environmental conditions and herbivore biomass determine coral reef benthic community composition: implications for quantitative baselines.
Claar_etal_2018_PLoSOne
Code, data, and figures for Claar et al manuscript "Global patterns and impacts of El Niño events on coral reefs: a meta-analysis." (PLOS ONE)
Magel_etal_2019_SciRep
Data and R code for: Effects of bleaching-associated mass coral mortality on reef structural complexity across a gradient of local disturbance
RobinsonBaum_2016_CJFAS
Code accompanying Robinson & Baum (2016, Canadian Journal of Fisheries & Aquatic Sciences)
White_etal_2015_ConsBiol
This repository contains code and additional figures for work on Cocos Island
gya-research
GYA fundamental research - survey response
Iacarella_etal_2018_GlobalChangeBiology
R scripts for beta-diversity analysis
open-science-project
Ideas, data, R scripts, figures, and writing for Baum lab #OpenDerby
Osgood_etal_2019_PLOSOne
Data and code for Osgood et al. 2019 PLOS One
Osgood_etal_2020_AfrMarSci
Data and R code accompanying: Chondrichthyans as an umbrella species-complex for conserving South African biodiversity
Osgood_etal_2021_JAE
Data and R code for: Effects of climate-change driven gradual and acute temperature changes on shark and ray species
Sean_Fish_Acoustics17-18
All data related to Sean's acoustics chapter of his Masters thesis
Starko_et_al_Porites_KI
Code and data associated with Starko et al. (2023): Marine heawaves threaten cryptic coral diversity and erode associations amongst coevolving partners.
BarkleySound_CanopyKelp
Data and code associated with Starko et al. 2022. Ecological Applications.
Maucieri_Baum_2021_BioCon
Data and R code for: Impacts of heat stress on soft corals, an overlooked and highly vulnerable component of coral reef ecosystems, at a central equatorial Pacific atoll
Maucieri_etal_2023_ProcRoyB
Data and R code for: Tipping points and interactive effects of chronic human disturbance and acute heat stress on coral diversity
McDevittIrwin_etal_2019_CoralReefs
This is the repository for McDevitt-Irwin et al. 2019 in Coral Reefs
WestGridIntro
This repository serves as a learning space for Baum lab members wishing to learn about using WestGrid for data storage, and advanced computation.