bast / MRI-extract-surfaces

Set of containerized scripts to extract mesh surfaces from a T1/T2-weighted MRI scans.

bast/MRI-extract-surfaces Issues

Also record Fpz - T7 positions to file
Closed 5 months ago
Move meshes to own folder for a better structure
Closed 5 months ago
Verify whether the simnibs step uses all available threads
Closed 6 months ago1
Allow to optionally also use the T2 data if available
Closed 6 months ago
Save EEG positions to file
Closed 6 months ago
Use MNI coordinate system
Closed 6 months ago1
Add version information to the output folder
Closed 6 months ago
Make it work without internet connection
Updated 7 months ago1
Clarify and refactor the post-processing step
Closed 8 months ago
Add post-processing step to orient and filter/clean the mesh for the second step
Closed 8 months ago
Update base image
Closed 8 months ago
Input data does not have to be gzipped
Closed 8 months ago