Geoff Barton's Computational Biology Group's repositories
AlmostSignificant
A server for maintaining high-throughput sequencing QC data
slivka-bio
Bioinformatics command line tools wrapped as slivka services with customisations for access from Jalview
Colabfold_batch_installer
Automated colabfold installation for UoD HPC Cluster
covid19-ace2-variants
Research code and data to interpret the effect of ACE2 variants on SARS-CoV-2 infection
slivka-bio-docker
Docker Compose configuration for slivka-bio
SM_dundee-resource-templates
This project serves as a template for building web-based bioinformatics tools.
SM_Pfam-gnomAD-statistics
Repository containing notebooks to compute statistics in the paper "A unified approach to evolutionary conservation and population constraint in proteins".
statistics_course
Figures for lectures on statistics
JSU_ANK_analysis
This repository contains the main bits of code used in my analysis of the ankyrin protein repeat family
DRSASP-NoD-Docker
Docker configuration for NoD
fenr-shiny-example
Example of a Shiny app for fast enrichment package fenr
mettl16_phylogenetics
pipelines and scripts for phylogenetic association mapping of splicing traits
MG_ChromCom2
Chromatin compaction 2 (Tanaka)
MG_COVIDProt_neutrophils
Large-scale proteomics of COVID neutrophils (Chalmers)
MG_EarlyReplication
Scripts for de Costa et al. manuscript (Blow)
MG_NCCProt
Nascent Chromatin Capture Proteomics (Alabert)
MG_PlantInfection
How are Phytophthora effectors taken into plant cells? (Birch)
MG_sulfRNAseq
Re-analysis of public data to compare to COVID RNA-seq results (Chalmers)
MG_UbiMito
Mitochondrial ubiquitin landscape in neurons
PT_HiFi_rhizobial_assemblies
scripts to assemble PacBio HiFi data from rhizobial microbiome