barthelemymp

TULIP-TCR

Quantum_Encoding

Using a deep learning embedding of classical data in order to get an insight of the link between classical data characteristics and quantum properties

ProteinDomainDomainTranslation

Context-Aware Generative Models for Multi-Domain Proteins using Transformers

citation_network_prediction

Edges have been deleted at random from a citation network. Your mission is to accurately reconstruct the initial network using graph-theoretical, textual, and other information. In this competition, we define a citation network as a graph where nodes are research papers and there is an edge between two nodes if one of the two papers cite the other.

Domain2DomainProteinTranslation

FLIP

A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design

GPT_Prot

simple dms check for transformer decoder

jean-zay-doc

Collaborative documentation for and from Jean Zay users. Official Jean Zay documentation is here: http://www.idris.fr/eng/jean-zay/

multi_domain_transformer_network

NetTCR

NetTCR-2.0. Sequence-based prediction of peptide-TCR binding

PairwiseDistillations

Code accompanying "Interpretable Pairwise Distillations for Generative Protein Sequence Models" by Feinauer C; Meynard-Piganeau, B; Lucibello C.

phyloreplica

Learning Invariant correlation across phylogenic tree.

Quantum_MC

Monte Carlo on the XY Model using trotter decomposition.

RNN_numbers

plm

ProteinMPNNO

Code for the ProteinMPNN paper

Tutorials