Dogu Baran Aydogan (baranaydogan)

baranaydogan

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Company:University of Eastern Finland

Location:Finland

Twitter:@baranaydogan

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Dogu Baran Aydogan's repositories

realTimeTractogramVisualizer

Real-time tractogram computer and visualizer

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purifibre

Purifibre removes spurious streamlines from tractograms

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TrackerYoga

Bend, twist, spread... TrackerYoga is a set of synthetic diffusion MRI data for testing tractography algorithms.

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trekker

dMRI based fiber tracking using parallel transport tractography

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dipy

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

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dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

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EDT

Euclidean Distance Transform

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getStartedWithNifti_read

A short and effective crash course on reading three dimensional nifti images

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qmenta-sdk-example-irontract-challenge

An example of a QMENTA-compatible tool with all the required files to build and test it.

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qmenta-sdk-irontract-challenge

qmenta-sdk-irontract-challenge

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