Hiroki Ban's repositories
Taxonomy.jl
Julia package to handle the NCBI Taxonomy database.
MetaPhylo.jl
Phylogenetic trees with metadata by Julia based on Graphs.jl and AbstractTrees.jl.
AbstractTrees.jl
Abstract julia interfaces for working with trees
CombinedParsers.jl
Compiled parser combinators and regular expressions in pure julia
Comonicon.jl
Your best CLI generator in JuliaLang
FlashWeave.jl
Inference of microbial interaction networks from large-scale heterogeneous abundance data
FlashWeaveCLI.jl
Experimental CLI for FlashWeave.jl
Graphs.jl
An optimized graphs package for the Julia programming language
KmerAnalysis.jl
K-mer counting algorithms and count-data utilities for the BioJulia framework
Kmers.jl
In development: Kmer types and methods for julia
Makie.jl
High level plotting on the GPU.
MMETSP
re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project
ReadDatastores.jl
Datastores for reads, not your papa's FASTQ files.
Tries.jl
A Julia prefix tree. Trie is an associative data structure with keys of type NTuple{N,K} where N and values of type V.
viralrecall
Detection of NCLDV signatures in 'omic data