bacpop / ggCaller

Bifrost graph gene caller.

bacpop/ggCaller Issues

ggcaller terminate called after throwing an instance of 'std::out_of_range'
Closed 3 months ago4
TypeError: set_axis() got an unexpected keyword argument 'copy' during execution
Closed 4 months ago8
Smaller core genome with less stringent identity cut-off
Closed 4 months ago3
Please help with the following error
Closed 4 months ago7
Exception: Diamond search failed!
Closed 5 months ago6
Docker image not able to run ggCaller
Closed 6 months ago7
interpret the gene_presence_absence.csv
Closed 7 months ago1
Singularity execution problem
Closed 7 months ago2
First gene not annotated if the first base of the gene is the first base of the contig
Closed 8 months ago6
Download databases issue
Closed 9 months ago8
Output gffs empty if input fasta has bases in lowercase
Closed 9 months ago2
error handeling : terminate called after throwing an instance of 'std::out_of_range'
Closed 9 months ago9
Should I avoid including Sccafold in my input data?
Closed 9 months ago2
When using docker images, ggcaller does not work well
Closed 10 months ago6
python error (probably)
Closed 10 months ago4
HMMER3
Closed 10 months ago3
No sequences in core_genome_alignment.aln
Closed 10 months ago2
Frameshift mutations
Closed a year ago2
[conda installation] ImportError: libmkl_sequential.so.2: undefined symbol
Closed a year ago2
Identifying identical paralogues
Updated a year ago
Problem with larger dataset?
Closed a year ago3
biopython should be pinned at version 1.7.9 to avoid errors when building from source (with mamba)
Closed 2 years ago4
UnicodeDecodeError
Closed 2 years ago5
Cmake warnings when installing from source (unclear if they are problematic)
Closed 2 years ago2
ImportError: cannot import name 'UnknownSeq' from 'Bio.Seq'
Closed 2 years ago4
Error while following tutorial! Please help!
Closed 2 years ago4
Documentation for custom annotation databases
Updated 2 years ago2
struggling to install
Closed 2 years ago3