Wei-Yu Lin's repositories
autopvs1
An automatic classification tool for PVS1 interpretation of null variants
autospill
R package: AutoSpill algorithm for calculating spillover coefficients to compensate or unmix high-parameter flow cytometry data
CDSeq_R_Package
CDSeq R Package
CellR
CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
cols4all
Colors for all (R package)
cyCombine
Robust Integration of Single-Cell Cytometry Datasets
Cytoscape_workflows
collection of notebooks with different cytoscape workflows
data.table
R's data.table package extends data.frame:
dataviz
A book covering the fundamentals of data visualization
dotfiles
Let's be honest: mostly Emacs.
emacs-from-scratch
An example of a fully custom Emacs configuration developed live on YouTube!
ERGO-II
ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
forestplot
:exclamation: This is a read-only mirror of the CRAN R package repository. forestplot — Advanced Forest Plot Using 'grid' Graphics. Homepage: https://gforge.se/packages/ Report bugs for this package: https://github.com/gforge/forestplot/issues
GSEA_R
Updated implementation of the GSEA-P R application for modern R distributions
here
A simpler way to find your files
jake-emacs
My personal Emacs configuation.
MIND
Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
patterns
A curated collection of Nextflow implementation patterns
poisson.mash.alpha
An R package for Poisson multivariate adaptive shrinkage.
preNivolumabOnNivolumab
EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
rstudio4edu-book
Organizing rstudio4edu project progress
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
stat545
A :book: on data wrangling, exploration, & analysis with R - created by Jenny Bryan, made with bookdown
training
Nextflow training material
variantValidator
Public repository for VariantValidator project
WGCNA_Meta-analysis_BreastCancer
WGCNA meta-analysis of two breast cancer datasets