Braden Tierney's repositories
microbiome-association-demo-t2d
Demo microbiome association study for HMS BMI704 fall 2020
space_genomes
Comparative genomics on microbes and metagenomes from the ISS
CAMP-template
Template snakemake repo for the MetaSUB Core Analysis Modular Pipeline
camp_taxonomy
Taxonomic identification for the CAMP
GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
inspiration4-omics
Scripts run during processing and analysis of Inspiration4 omics data.
mas_gwas_comparison
Scripts for meta-analysis of microbiome/GWAS predictors
pds08
pds08 internal seed analysis
microbiome_reproducibility
Gauging robustness of microbiome associations
prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
radx-wastewater-scripts
Additional plotting and analysis scripts for Miami-Dade county wastewater analysis.
SqueezeMeta
A complete pipeline for metagenomic analysis
vironomy
Viral taxonomic classification and phylogenetic trees