b-niu's repositories
EstimateClonality
Forked from https://bitbucket.org/nmcgranahan/pancancerclonality/src/master/.
BIOBSS
A package for processing signals recorded using wearable sensors, such as Electrocardiogram (ECG), Photoplethysmogram (PPG), Electrodermal activity (EDA) and 3-axis acceleration (ACC).
BioinformaticsScripts
Bioinformatics scripts for NGS analysis.
clonevol
Inferring and visualizing clonal evolution in multi-sample cancer sequencing
DNA-seq-analysis
DNA sequencing analysis notes from Ming Tang
FusionInspector
FusionInspector code
gistic2
Genomic Identification of Significant Targets in Cancer (GISTIC), version 2
learningML
学习机器学习
maftools
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
mapscape
Visualization tool for spatial clonal evolution.
neoantigens
🏺 Exploring novel tumor epitope identification
phylowgs
Application for inferring subclonal composition and evolution from whole-genome sequencing data.
radcap
Software for processing data from RADcap
sv-cnv-studies
:books: Relevant papers for CNV and SV approaches
timescape
Visualization tool for temporal clonal evolution.
vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
yolo2coco
A tool for converting YOLO instance segmentation annotations to COCO format.