Aymane kricha's repositories
awesome-bioinformatics-tools
Awesome bioinformatics tools
awesome-datascience
:memo: An awesome Data Science repository to learn and apply for real world problems.
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Compass
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
gsam
gsam
M1_M2_MacrophageGEMs
Genome-scale Metabolic Modeling of CRC-associated Macrophage subtypes
biodatascience
This is the web resource for NTU's Bio-Data Science and Education Laboratory
COBRA.tutorials
Repository of tutorials for The COBRA Toolbox
community-platform
A platform to build useful communities that aim to tackle global problems
compairr
Comparison of Adaptive Immune Receptor Repertoires
cs-video-courses
List of Computer Science courses with video lectures.
Data-science
Collection of useful data science topics along with code and articles
Data-science-best-resources
Carefully curated resource links for data science in one place
DataScienceResources
Open Source Data Science Resources.
FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
functional_enrichment_analysis
A DIY guide to gene ontology, pathway, and gene set enrichment analysis
gRNA-Design-for-CRISPR-Cas9
A Python-based tool for designing and evaluating gRNAs for CRISPR-Cas9 gene editing.
harmony
Fast, sensitive and accurate integration of single-cell data with Harmony
learn-python
📚 Playground and cheatsheet for learning Python. Collection of Python scripts that are split by topics and contain code examples with explanations.
LightGBM_Machine_Learning_Peptide_Screening
Repository for paper: Accelerating the Screening of Small Peptide Ligands by Combining Peptide-Protein Docking and Machine Learning"
Pluto.jl
🎈 Simple reactive notebooks for Julia
Python
All Algorithms implemented in Python
RNA-seq-pipeline
RNA-seq pipeline for a specific FastQ file, using a Docker profile
SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
STAR
RNA-seq aligner
VoltRon
VoltRon: spatial omic analysis toolbox for multiomic integration using image registration