Stephan Saalfeld's repositories
ImgLib2Access
An ImgLib2 extension of Sage and Unser's (2001) ImageAccess. A simplification layer for teaching image processing.
fiji-scripts
A wild collection of useful and partially broken scripts for Fiji and TrakEM2
awesome-janelia-software
A curated list of awesome Janelia software
bigdataviewer-render-app
On the fly 3D visualization of render database stacks
bigdataviewer-vistools
Helpers to use BigDataViewer as a quick visualization tool in other projects.
experiments
Immature experimental stuff
imagej-tensorflow
ImageJ/TensorFlow integration library.
mastodon
Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
parallel-elastic-alignment
A script collection and workflow description to parallelize elastic alignment with TrakEM2 on a cluster
quarto-test
minimal working example
SAM_service
web service to supply segment_anything models, when provided with an image
volume-renderer
Primitive ImgLib2 volume renderer