awurster / hvf_data_parser

Parses data from HVF optical machine thingy.

hvf_data_parser

Parses data from HVF Carl Zeiss optical machine thingy to CSV data for Excel-ing.

Setup

pipenv install -r requirements.txt
pipenv shell

Usage

Simple usage to convert a single XML data file to CSV output.

python hvf_to_csv.py ./<test_results>.xml

About the data

The data tested is generated by a Carl Zeiss Meditec 750 running HFA2 Software version 4.2.2. All test results for each patient are in one giant XML data blob.

<?xml version="1.0" encoding="UTF-8"?>
<HFA_EXPORT>
  <HFA_XML_VERSION>1.0</HFA_XML_VERSION>
  <HFA2_SOFTWARE_VERSION>4.2.2</HFA2_SOFTWARE_VERSION>
  <PATIENT>
    <LAST_NAME>KPC</LAST_NAME>
    <GIVEN_NAME/>
    <MIDDLE_NAME/>
    <NAME_PREFIX/>
    <NAME_SUFFIX/>
    <FULL_NAME>KPC</FULL_NAME>
    <PATIENT_ID>nnnnn-nnnn</PATIENT_ID>
    <BIRTH_DATE>nnnn-nn-nn</BIRTH_DATE>
    <STUDY>
      <VISIT_DATE>2020-01-07</VISIT_DATE>
      <SERIES>
        <SERIES_DATE_TIME>2020-01-7T16:18:51</SERIES_DATE_TIME>
        <MODALITY>HFA</MODALITY>
        <SITE>0</SITE>
        <INSTRUMENT>
          <INSTRUMENT_NAME>HFA</INSTRUMENT_NAME>
          <MANUFACTURER>Carl Zeiss Meditec</MANUFACTURER>
          <MODEL_NUMBER>750</MODEL_NUMBER>
          <SERIAL_NUMBER>xxxx</SERIAL_NUMBER>
          <SOFTWARE_VERSION>4.2.2</SOFTWARE_VERSION>
        </INSTRUMENT>
....