awohns

unified_genealogy_paper

A Unified Genealogy of Modern and Ancient Humans

ldgm

Software for linkage disequilibrium graphical models

tspyro

Joint inference of geography and time using Pyro and tree sequences

ldgm_paper

Code for the LDGM paper.

tree-sequence-phyloseminar

Jupyter notebook to accompany tree sequence fundmentals phyloseminar

109-Final-Project

CS109

5primeutr

adding-species-manuscript

manuscript materials for the adding species paper

aneurysm_genetics

Analysis and figures for aneurysm genetics project

appendix

appendix_2

Damage Plots for St John's Samples.

firefly

gdf5_tsinfer

height

msprime

Simulate genealogical trees and genomic sequence data using population genetic models

neolithic-tsinfer

Run modern descendants analysis for "Kinship and burial in a late Neolithic Cambridgeshire site"

networkx

Network Analysis in Python

relative-allele-age

Code for relative allele age work and transfer report

roman_britain

selection

selection_v4

simulatingcasecontroldata

stdpopsim

A library of standard simulation models for msprime

treeseq-inference

Work for the tree sequence inference paper.

tsinfer

Infer a tree sequence from genetic variation data

tsinfer-benchmarking

tskit

The tree sequence toolkit

unified_genealogy

what-is-an-arg-paper

Manuscript and code for the "What is an ARG?" paper

withrsid