Anthony Wilder Wohns's repositories
unified_genealogy_paper
A Unified Genealogy of Modern and Ancient Humans
ldgm_paper
Code for the LDGM paper.
tree-sequence-phyloseminar
Jupyter notebook to accompany tree sequence fundmentals phyloseminar
109-Final-Project
CS109
adding-species-manuscript
manuscript materials for the adding species paper
aneurysm_genetics
Analysis and figures for aneurysm genetics project
appendix_2
Damage Plots for St John's Samples.
msprime
Simulate genealogical trees and genomic sequence data using population genetic models
neolithic-tsinfer
Run modern descendants analysis for "Kinship and burial in a late Neolithic Cambridgeshire site"
networkx
Network Analysis in Python
relative-allele-age
Code for relative allele age work and transfer report
stdpopsim
A library of standard simulation models for msprime
treeseq-inference
Work for the tree sequence inference paper.
tsinfer
Infer a tree sequence from genetic variation data
tskit
The tree sequence toolkit
what-is-an-arg-paper
Manuscript and code for the "What is an ARG?" paper